Мир до нас: Новый взгляд на происхождение человека - Хайэм Том
106
Rasmussen, M. et al. 2010. Ancient Human Genome Sequence of an Extinct Palaeo-Eskimo. Nature 463: 757–62.
107
Olalde, I. et al. 2018. The Beaker Phenomenon and the Genomic Transformation of Northwest Europe. Nature 555: 190–96.
108
Pääbo, S. 2014. Neanderthal Man: In Search of Lost Genomes. New York: Basic Books.
109
Там же.
110
Krause, J. et al. 2010. The Complete Mitochondrial DNA Genome of an Unknown Hominin from Southern Siberia. Nature. 464: 894–7.
111
Reich, D. et al. 2010. Genetic History of an Archaic Hominin Group from Denisova Cave in Siberia. Nature 468: 1053–60.
112
Meyer, M. et al. 2012. A High-Coverage Genome Sequence from an Archaic Denisovan Individual. Science 338: 222–6. В геномах с высоким покрытием последнее обычно бывает больше 20X. Среди древних геномов рекорд принадлежит шведскому мезолитическому геному с археологической стоянки Стора Фёрвар, покрытие которого составляет 70X (Torsten Günther et al., PLoS Biology 2018). Среди наших древнейших палеолитических образцов особняком стоит кость «алтайского неандертальца», «Денисова 5», по которой был составлен геном с выдающимся покрытием в 52X. Такого уровня не достигает даже большинство геномов с высоким покрытием, составленных для наших современников. Например, геном Крейга Вентера, руководителя одной из двух групп, соревновавшихся за первенство в деле секвенирования человеческого генома, имеет покрытие всего лишь 7,5X.
113
Green, R. E. et al. 2010. A Draft Sequence of the Neandertal Genome. Science 328: 710–22.
114
Bennett, E. A. et al. 2019. Morphology of the Denisovan Phalanx Closer to Modern Humans Than to Neanderthals. Science Advances, 4 сентября 2019 г.: eaaw3950.
115
Meyer et al. 2012.
116
Prüfer, K. et al. 2017. A High-Coverage Neandertal Genome from Vindija Cave in Croatia. Science 358: 655–8.
117
Green et al. 2010.
118
Reich, D. et al. 2010.
119
Sawyer, S. et al. 2015. Nuclear and Mitochondrial DNA Sequences from Two Denisovan Individuals. Proceedings of the National Academy of Sciences 112: 15696–700.
120
Prüfer, K. et al. 2017. A High-Coverage Neandertal Genome from Vindija Cave in Croatia. Science 358: 655–8.
121
Bennett, E. A. et al. 2019. Morphology of the Denisovan Phalanx Closer to Modern Humans Than to Neanderthals. Science Advances, 4 сентября 2019 г.: eaaw3950.
122
Reich, D. et al. 2010. Genetic History of an Archaic Hominin Group from Denisova Cave in Siberia. Nature 468: 1053–60.
123
См.: Meyer, M. et al. 2012. A High-Coverage Genome Sequence from an Archaic Denisovan Individual. Science 338: 222–6. Анализ позаимствован из: Viola, B. et al. Morphology of the Denisova Molar and Phalanx. Stratigraphy and Dating (Supplementary Information 12).
124
Arnold, L. J. et al. 2014. Luminescence Dating and Palaeomagnetic Age Constraint on Hominins from Sima de los Huesos, Atapuerca, Spain. Journal of Human Evolution 67: 85–107.
125
Xing, S. et al. 2015. Hominin Teeth from the Early Late Pleistocene Site of Xujiayao, Northern China. American Journal of Physical Anthropology 156: 224–40; Martinón-Torres, M. et al. 2018. A 'Source and Sink' Model for East Asia? Preliminary Approach Through the Dental Evidence. Comptes Rendus Palevol 17: 1–2, 33–43.
126
Tu, H. et al. 2015. 26Al/ 10Be Burial Dating of Xujiayao-Houjiayao Site in Nihewan Basin, Northern China. PLoS ONE 10(2): e0118315.
127
Xing et al. 2015.
128
Martinón-Torres, M. et al. 2017. Homo sapiens in the Eastern Asian Late Pleistocene. Current Anthropology 58(S17): S434–S448.
129
Раскопал находку Ли Чжан Ян из пекинского Института палеонтологии позвоночных и палеоантропологии.
130
Li, Z. et al. 2019. Engraved Bones from the Archaic Hominin Site of Lingjing, Henan Province. Antiquity 93(370): 886–900.
131
Li, Z.-Y. et al. 2017. Late Pleistocene Archaic Human Crania from Xuchang, China. Science 355: 969–72.
132
Llamas, B. et al. 2012. High-Resolution Analysis of Cytosine Methylation in Ancient DNA. PLoS ONE 7: e30226.
133
Gokhman, D. et al. 2014. Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan. Science 344: 523–7.
134
Briggs, A. W. et al. 2007. Patterns of Damage in Genomic DNA Sequences from a Neandertal. Proceedings of the National Academy of Sciences 104(37): 14616–21.
135
Gokhman, D. et al. 2019. Reconstructing Denisovan Anatomy Using DNA Methylation Maps. Cell 179(1): 180–92.
136
Gokhman et al. 2019.
137
Schneider, E., El Hajj, N. and Haaf, T. 2014. Epigenetic Information from Ancient DNA Provides New Insights into Human Evolution. Commentary on Gokhman, D. et al. (2014): Reconstructing the DNA Methylation Maps of the Neanderthal and the Denisovan. Science 344: 523–7. Brain, Behavior and Evolution 84(3): 169–71.
138
Личный комментарий Донцзюй Чжана от 22 ноября 2019 г.
139
www.eva.mpg.de/evolution/downloads.html.
140
Welker, F. et al. 2016. Palaeoproteomic Evidence Identifies Archaic Hominins Associated with the Châtelperronian at the Grotte du Renne. Proceedings of the National Academy of Sciences 113(40): 11162–7; Welker, F. 2018. Palaeoproteomics for Human Evolution Studies. Quaternary Science Reviews 190: 137–47.
141
Orlando, L. et al. 2013. Recalibrating Equus Evolution Using the Genome Sequence of an Early Middle Pleistocene Horse. Nature 499: 74–8.
142
Demarchi, B. et al. 2016. Protein Sequences Bound to Mineral Surfaces Persist into Deep Time. eLife 5: e17092.
143
Schroeter, E. R. et al. 2017. Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein. Journal of Proteome Research 16(2): 920–32.
144