Михаил Никитин - Происхождение жизни. От туманности до клетки
Montmerle, T. et al. 3. Solar System Formation and Early Evolution: the First 100 Million Years // Earth, Moon, and Planets, 2006, vol. 98, pp. 39–95. DOI: 10.1007/s11038-006-9087-5
Moore, S. J. et al. Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12) // Proceedings of the National Academy of Sciences, 2013, vol. 110, pp. 14906–14911. DOI: 10.1073/pnas.1308098110
Morbidelli, A., Brasser, R., Gomes, R., Levison, H. F. & Tsiganis, K. Evidence from the Asteroid Belt for a Violent Past Evolution of Jupiter's Orbit // The Astronomical Journal, 2010, vol. 140, p. 1391. DOI: 10.1088/0004–6256/140/5/1391
Morbidelli, A., Levison, H. F., Tsiganis, K. & Gomes, R. Chaotic capture of Jupiter's Trojan asteroids in the early Solar System // Nature, 2005, vol. 435, pp. 462–465. DOI: 10.1038/nature03540
Moreira, M. Noble Gas Constraints on the Origin and Evolution of Earth's Volatiles // Geochemical Perspectives, 2013, vol. 2, pp. 229–230. URL: http://perspectives.geoscienceworld.org/content/2/2/229
Mulkidjanian, A. Y. & Junge, W. On the origin of photosynthesis as inferred from sequence analysis // Photosynthesis Research, 1997, vol. 51, pp. 27–42. DOI: 10.1023/A:1005726809084
Mulkidjanian, A. Y. & Galperin, M. Y. On the origin of life in the zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth // Biology Direct, 2009, vol. 4, p. 27. DOI: 10.1186/1745-6150-4-27
Mulkidjanian, A. Y. & Galperin, M. Y. Physico-chemical and evolutionary constraints for the formation and selection of first biopolymers: towards the consensus paradigm of the abiogenic origin of life // Chemistry & Biodiversity, 2007, vol. 4, pp. 2003–2015. DOI: 10.1002/cbdv.200790167
Mulkidjanian, A. Y. et al. The cyanobacterial genome core and the origin of photosynthesis // Proceedings of the National Academy of Sciences, 2006, vol. 103, pp. 13126–13131. DOI: 10.1073/pnas. 0605709103
Mulkidjanian, A. Y. On the origin of life in the zinc world: 1. Photosynthesizing, porous edifices built of hydrothermally precipitated zinc sulfide as cradles of life on Earth // Biology Direct, 2009, vol. 4, p. 26. DOI: 10.1186/1745-6150-4-26
Mulkidjanian, A. Y., Bychkov, A. Y., Dibrova, D. V., Galperin, M. Y. & Koonin, E. V. Origin of first cells at terrestrial, anoxic geothermal fields // Proceedings of the National Academy of Sciences, 2012, vol. 109, pp. E821 – E830. DOI: 10.1073/pnas.1117774109
Mulkidjanian, A. Y., Cherepanov, D. A. & Galperin, M. Y. Survival of the fittest before the beginning of life: selection of the first oligonucleotide-like polymers by UV light // BMC Evolutionary Biology, 2003, vol. 3, p. 12. DOI: 10.1186/1471-2148-3-12
Mulkidjanian, A. Y., Galperin, M. Y. & Koonin, E. V. Co-evolution of primordial membranes and membrane proteins // Trends in Biochemical Sciences, 2009, vol. 34, pp. 206–215. DOI: 10.1016/j.tibs.2009.01.005
Mulkidjanian, A. Y., Galperin, M. Y., Makarova, K. S., Wolf, Y. I. & Koonin, E. V. Evolutionary primacy of sodium bioenergetics // Biology Direct, 2008, vol. 3, p. 13. DOI: 10.1186/1745-6150-3-13
Navarro-González, R., McKay, C. P. & Mvondo, D. N. A possible nitrogen crisis for Archaean life due to reduced nitrogen fixation by lightning // Nature, 2001, Proceedings of the National Academy of Sciences, 2012, vol. 109, pp. 61–64. DOI: 10.1038/35083537
Nelson, K. E., Levy, M. & Miller, S. L. Peptide nucleic acids rather than RNA may have been the first genetic molecule // Proceedings of the National Academy of Sciences of the United States of America 2000, vol. 97, pp. 3868–3871. DOI: 10.1073/pnas.97.8.3868
Nemchin, A. A. et al. A light carbon reservoir recorded in zircon-hosted diamond from the Jack Hills // Nature, 2008, vol. 454, pp. 92–95. DOI: 10.1038/nature07102
Nielsen, P. E. Peptide Nucleic Acids and the Origin of Life // Chemistry & Biodiversity, 2007, vol. 4, pp. 1996–2002. DOI: 10.1002/cbdv.200790166
Noller, H. F. Evolution of Protein Synthesis from an RNA World // Cold Spring Harbor Perspectives in Biology, 2012, vol. 4, p. a003681. DOI: 10.1101/cshperspect.a003681
Noller, H. F. The driving force for molecular evolution of translation // RNA, 2004, vol. 10, pp. 1833–1837. DOI: 10.1261/rna.7142404
Nunoura, T. et al. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group // Nucleic Acids Research, 2011, vol. 39, pp. 3204–3223. DOI: 10.1093/nar/gkq1228
Ogasawara, H. et al. Synthesizing Oligomers from Monomeric Nucleotides in Simulated Hydrothermal Environments // Origins of life and evolution of the biosphere, 2000, vol. 30, pp. 519–526. DOI: 10.1023/A:1026539708173
Olson, J. & Blankenship, R. Thinking About the Evolution of Photosynthesis // Photosynthesis Research, 2004, vol. 80, pp. 373–386. DOI: 10.1023/B: PRES.0000030457.06495.83
Orgel, L. E. The Implausibility of Metabolic Cycles on the Prebiotic Earth // PLoS Biology, 2008, vol. 6. DOI: 10.1371/journal.pbio.0060018
Otroshchenko, V. A. & Vasilyeva, N. V. Formation of RNA oligonucleotides over the mineral surface preliminary irradiated with UV light // Reaction Kinetics and Catalysis Letters, 2009, vol. 97, pp. 151–156. DOI: 10.1007/s11144-009-0006-4
Outten, F. W. Iron-sulfur clusters as oxygen-responsive molecular switches // Nature Chemical Biology, 2007, vol. 3, pp. 206–207. DOI: 10.1038/nchembio0407–206
Padmanabhan, S., York, E. J., Stewart, J. M. & Baldwin, R. L. Helix propensities of basic amino acids increase with the length of the side-chain // Journal of Molecular Biology, 1996, vol. 257, pp. 726–734. DOI: 10.1006/jmbi.1996.0197
Pasek, M. A. Rethinking early Earth phosphorus geochemistry // Proceedings of the National Academy of Sciences, 2008, vol. 105, pp. 853–858. DOI: 10.1073/pnas.0708205105
Patel, S. C., Bradley, L. H., Jinadasa, S. P. & Hecht, M. H. Cofactor binding and enzymatic activity in an unevolved superfamily of de novo designed 4-helix bundle proteins // Protein Science, 2009, vol. 18, pp. 1388–1400. DOI: 10.1002/pro.147
Pearson, A., Budin, M. & Brocks, J. J. Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus // Proceedings of the National Academy of Sciences, 2003, vol. 100, pp. 15352–15357. DOI: 10.1073/pnas.2536559100
Pech, H. et al. Detection of Geothermal Phosphite Using High-Performance Liquid Chromatography // Environmental Science & Technology, 2009, vol. 43, pp. 7671–7675. DOI: 10.1021/es901469t
Pei, J., Li, W., Kinch, L. N. & Grishin, N. V. Conserved evolutionary units in the heme-copper oxidase superfamily revealed by novel homologous protein families // Protein Science, 2014, vol. 23, pp. 1220–1234. DOI: 10.1002/pro.2503
Pestunova, O., Simonov, A., Snytnikov, V., Stoyanovsky, V. & Parmon, V. Putative mechanism of the sugar formation on prebiotic Earth initiated by UV-radiation // Advances in Space Research, 2005, vol. 36, pp. 214–219. DOI: 10.1016/j.asr.2005.02.049
Philippot, P. et al. Early Archaean Microorganisms Preferred Elemental Sulfur, Not Sulfate // Science, 2007, vol. 317, pp. 1534–1537. DOI: 10.1126/science.1145861
Philippot, P., van Zuilen, M. & Rollion-Bard, C. Variations in atmospheric sulphur chemistry on early Earth linked to volcanic activity // Nature Geoscience, 2012, vol. 5, pp. 668–674. DOI: 10.1038/ngeo1534
Poole, A., Penny, D. & Sjöberg, B.-M. Methyl-RNA: an evolutionary bridge between RNA and DNA? // Chemistry & Biology, 2000, vol. 7, pp. R207 – R216. DOI: 10.1016/S1074–5521(00)00042–9
Poole, A. M. & Logan, D. T. Modern mRNA Proofreading and Repair: Clues that the Last Universal Common Ancestor Possessed an RNA Genome? // Molecular Biology and Evolution, 2005, vol. 22, pp. 1444–1455. DOI: 10.1093/molbev/msi132
Powner, M. W., Gerland, B. & Sutherland, J. D. Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions // Nature, 2009, vol. 459, pp. 239–242. DOI: 10.1038/nature08013
Pugachev, K. V. et al. High Fidelity of Yellow Fever Virus RNA Polymerase // Journal of Virology, 2004, vol. 78, pp. 1032–1038. DOI: 10.1128/JVI.78.2.1032–1038.2004
Quayle, J. R. & Ferenci, T. Evolutionary aspects of autotrophy // Microbiological Reviews, 1978, vol. 42, pp. 251–273.
Rajamani, S. et al. Lipid-assisted Synthesis of RNA-like Polymers from Mononucleotides // Origins of Life and Evolution of Biospheres, 2007, vol. 38, pp. 57–74. DOI: 10.1007/s11084-007-9113-2
Ricardo, A., Carrigan, M. A., Olcott, A. N. & Benner, S. A. Borate Minerals Stabilize Ribose // Science, 2004, vol. 303, pp. 196–196. DOI: 10.1126/science.1092464
Riguzzi, F., Panza, G., Varga, P. & Doglioni, C. Can Earth's rotation and tidal despinning drive plate tectonics? // Tectonophysics, 2010, vol. 484, pp. 60–73. DOI: 10.1016/j.tecto.2009.06.012
Ritson, D. & Sutherland, J. D. Prebiotic synthesis of simple sugars by photoredox systems chemistry // Nature chemistry, 2012, vol. 4, pp. 895–899. DOI: 10.1038/nchem.1467
Robertson, M. P., Knudsen, S. M. & Ellington, A. D. In vitro selection of ribozymes dependent on peptides for activity // RNA, 2004, vol. 10, pp. 114–127. DOI: 10.1261/rna.5900204
Rodin, A. S., Szathmáry, E. & Rodin, S. N. On origin of genetic code and tRNA before translation // Biology Direct, 2011, vol. 6, p. 14. DOI: 10.1186/1745-6150-6-14
Rodin, A. S., Szathmáry, E. & Rodin, S. N. One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation // Biology Direct, 2009, vol. 4, p. 4. DOI: 10.1186/1745-6150-4-4
Rodin, S. N. & Ohno, S. Two types of aminoacyl-trna synthetases could be originally encoded by complementary strands of the same nucleic ACID // Origins of life and evolution of the biosphere, 1995, vol. 25, pp. 565–589. DOI: 10.1007/BF01582025
Root-Bernstein, M. & Root-Bernstein, R. The ribosome as a missing link in the evolution of life // Journal of Theoretical Biology, 2015, vol. 367, pp. 130–158. DOI: 10.1016/j.jtbi.2014.11.025
Roth, A. & Breaker, R. R. An amino acid as a cofactor for a catalytic polynucleotide // Proceedings of the National Academy of Sciences, 1998, vol. 95, pp. 6027–6031.
Rothschild, L. J. The evolution of photosynthesis… again? // Philosophical Transactions of the Royal Society of London B: Biological Sciences, 2008, vol. 363, pp. 2787–2801. DOI: 10.1098/rstb.2008.0056
Russell, M. J. et al. The Drive to Life on Wet and Icy Worlds // Astrobiology, 2014, vol. 14, pp. 308–343. DOI: 10.1089/ast.2013.1110
Ryu, Y., Kim, K.-J., Roessner, C. A. & Scott, A. I. Decarboxylative Claisen condensation catalyzed by in vitro selected ribozymes // Chemical Communications, 2006, vol. 13, pp. 1439–1441. DOI: 10.1039/b517160a
Saladino, R., Crestini, C., Ciciriello, F., Costanzo, G. & Di Mauro, E. Formamide Chemistry and the Origin of Informational Polymers // Chemistry & Biodiversity, 2007, vol. 4, pp. 694–720. DOI: 10.1002/cbdv.200790059
Sato, T., Atomi, H. & Imanaka, T. Archaeal Type III RuBisCOs Function in a Pathway for AMP Metabolism // Science, 2007, vol. 315, pp. 1003–1006. DOI: 10.1126/science.1135999
Schoepp-Cothenet, B. et al. On the universal core of bioenergetics // Biochimica et Biophysica Acta (BBA) – Bioenergetics, 2013, vol. 1827, pp. 79–93. DOI: 10.1016/j. bbabio.2012.09.005
Schöning, K.-U. et al. Chemical Etiology of Nucleic Acid Structure: The α-Threofuranosyl– (3'→2') Oligonucleotide System // Science, 2000, vol. 290, pp. 1347–1351. DOI: 10.1126/science.290.5495.1347
Sczepanski, J. T. & Joyce, G. F. A cross-chiral RNA polymerase ribozyme // Nature, 2014, vol. 515, pp. 440–442. DOI: 10.1038/nature13900
Sen, D. & Poon, L. C. H. RNA and DNA complexes with hemin [Fe (III) heme] are efficient peroxidases and peroxygenases: how do they do it and what does it mean? // Critical Reviews in Biochemistry and Molecular Biology, 2011, vol. 46, pp. 478–492. DOI: 10.3109/10409238.2011.618220
Senanayake, S. D. & Idriss, H. Photocatalysis and the origin of life: synthesis of nucleoside bases from formamide on TiO2 (001) single surfaces // Proceedings of the National Academy of Sciences of the United States of America, 2006, vol. 103, pp. 1194–1198. DOI: 10.1073/pnas.0505768103
Shimada, H. & Yamagishi, A. Stability of Heterochiral Hybrid Membrane Made of Bacterial sn-G3P Lipids and Archaeal sn-G1P Lipids // Biochemistry, 2011, vol. 50, pp. 4114–4120. DOI: 10.1021/bi200172d
Shimizu, M., Yamagishi, A., Kinoshita, K., Shida, Y. & Oshima, T. Prebiotic Origin of Glycolytic Metabolism: Histidine and Cysteine can Produce Acetyl CoA from Glucose via Reactions Homologous to Non-phosphorylated Entner-Doudoroff Pathway // Journal of Biochemistry, 2008, vol. 144, pp. 383–388. DOI: 10.1093/jb/mvn073
Silverman, S. K. Deoxyribozymes: DNA catalysts for bioorganic chemistry // Organic & Biomolecular Chemistry, 2004, vol. 2, pp. 2701–2706. DOI: 10.1039/B411910J
Sivan, O., Antler, G., Turchyn, A. V., Marlow, J. J. & Orphan, V. J. Iron oxides stimulate sulfate-driven anaerobic methane oxidation in seeps // Proceedings of the National Academy of Sciences, 2014, vol. 111, pp. E4139 – E4147. DOI: 10.1073/pnas.1412269111
Smith, E. & Morowitz, H. J. Universality in intermediary metabolism // Proceedings of the National Academy of Sciences of the United States of America, 2004, vol. 101, pp. 13168–13173. DOI: 10.1073/pnas.0404922101
Solov'yov, I. A. & Schulten, K. Magnetoreception through Cryptochrome May Involve Superoxide // Biophysical Journal, 2009, vol. 96, pp. 4804–4813. DOI: 10.1016/j.bpj.2009.03.048
Sousa, F. L. et al. Early bioenergetic evolution // Philosophical Transactions of the Royal Society B: Biological Sciences, 2013, vol. 368, Article ARTN 20130088. DOI: 10.1098/rstb.2013.0088